Re: [Freesurfer] Longitudinal pipeline with multiple scans at one time point

2024-01-02 Thread Annchen Knodt
). But I can definitely see how it’s more appropriate to combine them at the cross-sectional step than to treat them as separate longitudinal time points. Thanks again! From: Annchen Knodt Date: Wednesday, December 6, 2023 at 5:59 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Longitudinal

[Freesurfer] Longitudinal pipeline with multiple scans at one time point

2023-12-06 Thread Annchen Knodt
, to account for the slight differences in the acquisitions. Any thoughts / suggestions are appreciated – thanks! Annchen Knodt Research Associate Laboratory of NeuroGenetics Duke University ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3

2023-06-24 Thread Annchen Knodt
en sourced correctly 4. resubmit recon-all (you don’t need the full path to recon-all if Freesurfer environment is set up correctly) Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Annchen Knodt Sent: Sunday, June 4, 2023 9:22 AM To: Freesurfer support list Subject: Re: [

Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3

2023-06-04 Thread Annchen Knodt
ard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Annchen Knodt Sent: Friday, June 2, 2023 2:53 PM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Troubleshooting "coul