[Freesurfer] WM-hypointensities

Hi all, I don't kown what is WM-hypointensities Is it a volume? I suppose this because WM-hypointensities is in the aseg.stats. thanks Anita di Iasio ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/ma

Re: [Freesurfer] standardize in asegstata2table

Can I have the volumes in the standardize space? Thanks, anita 2009/7/1 Bruce Fischl > Hi Anita, > > no, they are in native space. > > cheers, > Bruce > > On Wed, 1 Jul 2009, Anita di Iasio wrote: > > Hi all, >> I have a question. >> In the table cre

[Freesurfer] standardize in asegstata2table

Hi all, I have a question. In the table created from asegstats2table, are the volumes standardized to Talairach space? or are they in their orig space? thank in advanced, anita ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr

[Freesurfer] volume group analysis

Hi all, I have 2 groups of subjects and I want to do a volume group analysis to compare volumes of subcortical structures. I have to run my analysis with the command-line methods but I don't know the correct flags to use with the commands (mris_preproc and mri_glmfit). Can you help me? Can you

[Freesurfer] volume group analysis

Hi all, I follow the tutorial on group analysis. But the example is surface-based. I looked for something similar in freesurfer archive, but I can't find anything. Can someody helps me to do a volume-based group-analysis? which flag do I use with mris_preproc and mri_glmfit? for example I need

[Freesurfer] error recon-all

May 13 18:48:05 CEST 2009 Do you know what this problem is? Which is the origin of this problem? Do you konw how to fix it? thanks, Anita di Iasio ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailma

[Freesurfer] Re: [Analysis-bugs] aseg.volume.stats.dat problem

c1 = 'fsid ' and now the problem has solved and I can import aseg.volume in qdec. Now I want to ask if I can do this or there will be implicated errors. Thanks, Anita di Iasio 2009/5/13 Nick Schmansky > Anita, > > A required update to the aseg/aparcstats2table utilities was n

[Freesurfer] aseg.volume.stats.dat problem

entricleLeft-Inf-Lat-Vent" I can import the aseg.volume and all go right. Is it a bug?Can you fix it? Thanks all, Anita di Iasio ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] ERROR: could not read header info from T1 or orig

Hi, I have a problem: In the past Freesurfer runs and all go right. Now when I run tksurfer command, a error message appears: surfer: current subjects dir: models/buckner_data/tutorial_ subjs/group_analysis_tutorial/ surfer: not in "scripts" dir ==> using cwd for session root surfer: session root