[Freesurfer] Looking for older versions of mri_normalize

2006-09-13 Thread Andrew H Bell
To FreeSurfer Community, I've looking for older versions of mri_normalize - in particular mri_normalize.041022 I am working with monkey volumes and have found that this version gives me the best results. Thanks Andy Andrew H. Bell, PhD Visiting Post-Doctoral Fellow Laboratory of Brai

[Freesurfer] Matlab conflicts with FS-FAST

2005-10-31 Thread Andrew H Bell
?? Error: File: yak.m Line: 427 Column: 9 "title" previously appeared to be used as a function, conflicting with its use here as the name of a variable. A possible cause of this error is that you forgot to initialize the variable, or you have initialized it implicitly using load or eval

[Freesurfer] segmentation question

2005-07-01 Thread Andrew H Bell
is grey vs. white vs. CSF? It has been particularly trying with monkey data considering how much extra tissue they have surrounding their brain :) that doesn't always get clipped using the strip skull step. Thanks! Andy Andrew H. Bell, PhD Laboratory of Brain and Cognition Nat

[Freesurfer] Questions regarding monkey reconstructions

2005-06-22 Thread Andrew H Bell
er, when I look at the result after adding these points, they are hanging in empty space (i.e., they don't seem to have any effect). I'm sure this won't be the last of my questions. I appreciate all the help so far!! Thanks Andy Andrew H. Bell, PhD Laboratory of Brain an

[Freesurfer] using external usb hard drive with freesurfer

2005-06-06 Thread Andrew H Bell
To all Has anyone had any experience using an external drive with freesurfer (under LINUX)? I am trying to use a FAT32 drive with Freesurfer (I also use this drive with XP) and I keep running into the following error: "First T1 image: /mnt/usb/afnidata/subjects/bert/mri/T1/COR-001 not fou