Dear Douglas Greve,
thank you for your answer. read_annotation gives me the correspondence between anatomical labels and vertices.
To match the vertices to an anatomical region, all i need now (I guess) is a routine to load the vertices in label files as created in tksurfer into matlab.
Is
Dear Experts,
in my analysis i have created a set of surface labels based on significant clusters using tksurfer.
For a given label I would like to know which atlas-based anatomical region (e.g., as defined by the Freesurfer annotations) it occupies.
I know I can load annotations in tksurfer
Dear Experts,
i am analyzing a longitudinal study (three timepoints for each participant).
I manually register the second and third timepoint to the first timepoint using freeview.
Question: Is it possible to use these manually created transformation matrices to create a common template that
Dear Freesurfer list,I want to do a ROI analysis on longitudinally processed cortical thickness data in fsaverage space.I followed the steps proposed for long. processing on http://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova(i.e sample each time point onto the average surface, concaten
Dear Freesurfer list,I was wondering, whether a standard flatmap of the occipital lobe in fsaverage space is available ?In $FREESURFER_HOME/subjects/fsavarage/surf I found only flatmaps of the whole cortex (lh.cortex.patch.flat and rh.cortex.patch.flat).I know that the surface can be 'cutted' to p
