Re: [Freesurfer] Cortical thickness volume ROI to surface {Disarmed}

lh.fsaverage.ROI_MNI.mgh —noreshape tkmeditfv fsaverage lh inflated -overlay lh.fsaverage.M1_L.mgh -fthresh 0.5 I tried with another threshold, and to change it while in Freeview and it’s either the whole surface with the overlay or none. Thank you for your help! Alina Rojas > Am 16.11.2020 um

[Freesurfer] Cortical thickness volume ROI to surface {Disarmed}

o3o-JJ64DuVK1J6XpzIFNVqqzBDHDrU6O2cYjWTNnglb4Ow4OIdXr5Qq28eboicyUSvLl2KmB0P0lQY9abQIfjX6hs_1Q1FvwX1Tx7YnGwsbJIgqcpDRG0dkvqZc0pgeiBQbnNjLadwozbHME2Ale8Kt0-V-I2Urmgq5zbEhzlAPvCA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FVolumeRoiCorticalThickness> but after mri_vol2surf I get this message, I can’t visualize the ROI on the surface. I I’m using Freesurfer 7.0.1. How can I solve this? Thank you, Alina Rojas. srcvol = M1_L.

Re: [Freesurfer] HCP-MMP1 Parcellation to individual brain for stats

my subject obtained with Freesurfer but with the parcellation of the HCP-MMP1. Is there a document or a command where I can correlate these values with the name/number of cortical area? Regards, Alina > Am 20.07.2020 um 11:32 schrieb Alina Rojas : > > Thank you, the ciftify was run suc

Re: [Freesurfer] HCP-MMP1 Parcellation to individual brain for stats

explain how to go from GIFTI on > fsaverage to .annot on the native meshes and extract the stats. > > Matt. > > On 7/14/20, 8:54 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of > Alina Rojas" alinacol...@gmail.com> wrote: > >* External Email - Cau

[Freesurfer] HCP-MMP1 Parcellation to individual brain for stats

Parcellation given by the HCP-MMP1-Atlas between subjects. I searched the archive and didn’t find the solution. It would be so great if you could help me! Thank you and regards, Alina Rojas ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Lesioned hemisphere

External Email - Use Caution Hello Freesurfer experts, I’m analyzing subjects with a stroke in one hemisphere. Problem: recon-all breaks and gives an error at the white matter segmentation, what I understand. I don’t need the data from the lesioned hemisphere, I need the cortica

[Freesurfer] Fsaverage stats

External Email - Use Caution Hello Freesurfer Developers, I'm attempting to compare the cortical thickness values from the stats (?h.aparc.stats) of a stack of subjects and compare them with fsaverage. With aparcstats2table I did it for my subjects without problem, but the fsave