gt;>>>>> Clusters will then be determined significant if p<05, as
>>>>>>> evaluated against the permutation distribution for the maximal
>>>>>>> cluster size statistic.
>>>>>> You can choose any cluster-wise sig threshold
yeah, I've replaced the input with the sig.mgh for the contrast of
interest, which retruns something more plausible. Thanks again, and sorry
for the confusion.
Ta,
Alex
> I noticed that you are using contrasts.sig.mgh as the input to
> mri_surfcluster and that the source frame is 0. contrasts.si
Sorry, can I ask why the clustering step would invalidate FDR?
>From my understanding, FDR allows you set a limit on the number of false
positive in a family of contrasts reaching significance at a nominal
threshold. I would like to this nominal threshold using cluster stats
(e.g., p<.05, cluster
Hi all,
I was hoping someone could help me with the problem below. I'm a little
stuck on my analysis.
Thanks,
Alex
> On 11/28/2007 07:43 PM, Alex Fornito wrote:
>> Hi,
>> I have run qdec for a simple contrast comparing thickness across the
>> cortical surface between a patient and control group.
Hi all,
If i run a model in qdec that inludes 1 discrete and 1 continuous factor,
does the output for the group contrast covary for the continuous variable?
For example, if I want to compare two groups, and include group as my
discrete factor and age as a continuous factor, will the output for the
,
>
> It looks like the subject 'testavg' already exists. To overwrite it,
> add --force to the make_average_subject, or choose a different name for
> the --out arg (or delete the 'testavg' subject).
>
> Nick
>
>
> On Fri, 2007-10-26 at 11:03 +1000,
Hi all,
I've been having problems with make_average_subject. The command and error
are below. Below this is the same command with the output generated by the
--debug flag.
I am running version 4.0 (redhat) on Linux Debian.
I'd appreciate any help on this.
Thanks,
Alex
make_average_surface --su
That would be great. Thanks Bruce.
> Hi Alex,
>
> sorry, this is an unintended consequence of the code that prevents the
> surface from deforming into non-cortical structures. I'll see if I can
> fix it and get you a new version.
>
> cheers,
> Bruce
> On Thu
