[Freesurfer] skip subjects already processed

options) attempting to process it at the moment? Would appreciate any help thanks. Best, Akshay ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Difference b/w White matter hyper-intensities and hypo-intensities

Hi All, There is a label named White-matter hypo-intensities (77), is it the same as white matter hyper-intensity? If not, can anyone tell me the difference? Thanks in advance, Akshay ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] Fwd: Re: repeat: trouble loading nifti files

mri_convert path-to-nifti file mask.mgz --resample_type nearest -cs 256 On 5/7/13 2:55 PM, Bruce Fischl wrote: > can you send me the full mri_convert command line that is run? > On Tue, 7 May 2013, Akshay wrote: > >> Hi Bruce >> >> Please find the file attach

[Freesurfer] repeat: trouble loading nifti files

Hi All, I am re-posting this question since there was no response to my previous attempt. I have a problem conforming certain nifti files, the following is the log when i try to convert them, reading from /home/akshay/ADNI/137_S_1041/MIDAS_Whole_Brain_Mask/2006-11-09_09_35_11.0/S22310

[Freesurfer] Trouble loading nifti file

Hello all, I have a problem conforming certain nifti files, the following is the log when i try to convert them, reading from /home/akshay/ADNI/137_S_1041/MIDAS_Whole_Brain_Mask/2006-11-09_09_35_11.0/S22310/ADNI_137_S_1041_MR_MIDAS_Whole_Brain_Mask_Br_20120723235935683_S22310_I317755.nii

[Freesurfer] Whole Brain definition

aparc.a2009s+aseg segmentation file? Any help will be greatly appreciated. Akshay Univ. of Copenhagen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is

[Freesurfer] Definition of medial temporal lobe

; however for parahippocampal and entorhinal regions should i use aparc+aseg.mgz and aparc.a2009s+aseg.mgz? Any help will be appreciated. Best, Akshay ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman

[Freesurfer] Definition of temporal lobe

Hello all, Which labels reside in temporal lobe? Do I look at aseg or aseg+aparc.? I am very new to freesurfer therefore forgive me for my naive questions. Best, Akshay ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] Definition of anatomical regions

actual definition of whole brain and ventricles. For ex: WM Hypointensities are part of whole brain?, Since they increase in volume. Thank you , Akshay University of Copehagen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https