[Freesurfer] Aseg inforrmation

Hi Freesurfers, I have some questions about the aseg.stats file. What do the brainmask and brain segmentation volumes refer to? Is there a helpfile that defines these. Thanks Aju. ** Mr.Ajith Kumar U Junior Research Fellow, Department of Aud

[Freesurfer] STG Volume

Hello all, My lab needs to obtain STG volumes for a bunch of minc files. I've been going through the wiki and found that recon-all has to be run to first convert the files into mgz after which it will automatically generate a file with the volumes. I ran it on one of our computers (P4 @ 3.8 Ghz

Re: Re: [Freesurfer] Total Volumes

schl wrote: > >>Doug put together a white matter parcellation that does this kind of thing, but I'm not sure what the status of it is. Doug? >>On Wed, 28 Jun 2006, Ajith Kumar U wrote: >> >>>What I mean is, for example, the total volume of Heschl's Gyrus.

Re: Re: [Freesurfer] Total Volumes

ould the white matter volume of a cortical region mean? >On Wed, 28 Jun 2006, Ajith Kumar U wrote: > >>Hello All, >> >>How do we obtain the total volumes(gray+white) of certain regions. In ?.aparc.stats, I can find the gray matter volumes but not total volumes. Is this in some o

[Freesurfer] Total Volumes

Hello All, How do we obtain the total volumes(gray+white) of certain regions. In ?.aparc.stats, I can find the gray matter volumes but not total volumes. Is this in some other file? Thanks, Aju. ** Mr.Ajith Kumar U Junior Research Fellow,

[Freesurfer] recon-all without tcsh

Hi, Can recon-all run even if tcsh is not installed on the system. When I try running it, I get the message: -bash: /home/aju/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory Thanks, Aju. ** Mr.Ajith Kumar U Ju