[Freesurfer] how to deal with a big brain lesion?

Hi FreeSurfer experts, I happen to have a participant whose brain lesion from stroke (hemorrhage) distributed over a wide area. Therefore, the recon-all result is showing a big whole, about half a size of the cortex, on the anterior part of the left hemisphere corresponding to the lesion site.

Re: [Freesurfer] about issues with "recon-all"

aturday, September 6, 2014 9:56 AM To: Freesurfer support list Subject: Re: [Freesurfer] about issues with "recon-all" Hi Abel what OS are you running on? Did you source the file $FREESURFER_HOME/FreeSurferEnv.csh ? cheers Bruce On Sat, 6 Sep 2014, Abel Lei wrote: Hi FreeSurfers

Re: [Freesurfer] about issues with "recon-all"

Of Bruce Fischl Sent: Saturday, September 6, 2014 9:56 AM To: Freesurfer support list Subject: Re: [Freesurfer] about issues with "recon-all" Hi Abel what OS are you running on? Did you source the file $FREESURFER_HOME/FreeSurferEnv.csh ? cheers Bruce On Sat, 6 Sep 2014, Abel

[Freesurfer] about issues with "recon-all"

! Chia-Ming (Abel) Lei PhD Student/Graduate Student Researcher Language and Brain Lab (LABlab) & Adult Language Lab Department of Communication Sciences and Disorders School of Health and Rehabilitation Science University of Pittsburgh -below is the long~ error message-- chiaming-POR