[Freesurfer] problem with mris_label2annot

2015-05-13 Thread Aaron Goldman
Hello, >From the standard "fsaverage" subject, I'm trying to map a series of labels >(?h.oasis.chubs.*) to a group of my own subjects. My end goal is to create >summary files equivalent to ?h.aparc.stats for each subject. For sample >commands, I've been looking at the "BA label" section of a su

[Freesurfer] VOI's from Sabuncu et al. 2012

2015-05-07 Thread Aaron Goldman
Hello, I had a question about Sabuncu et al. 2012 (http://cercor.oxfordjournals.org/content/22/11/2653.long), in which the authors generated a series of ROIs related to incipient Alzheimer's disease: "Based on the resulting statistical maps, we delineated seven regions of interest (ROIs) on th

[Freesurfer] updating from 5.0 to 5.3

2015-02-11 Thread Aaron Goldman
Hello, I have a large set of images previously run in FreeSurfer 5.0. I'm also preparing to run a new batch of images and debating whether to use 5.3 or stick with 5.0. If I updated all the old datasets to 5.3, would I need to visually QC them a second time, or are the versions similar enough t