[Freesurfer] Commands missing in freesurfer directory

2011-06-06 Thread ANN40
Hi all, I recently downloaded and installed freesurfer for a Mac PowerPC. I tried running recon-all on my data and an error message came up saying command not found for talairach_avi and many other commands. I looked in my /Applications/freesurfer/bin directory and that file wasn't there. All t

[Freesurfer] Error: talairach_avi: Command not found.

2011-06-02 Thread ANN40
Hi all, I am running recon-all -autorecon1 -subjid subject and I have been getting an error saying: \n talairach_avi --i orig.mgz --xfm transforms/talairach.auto.xfm \n talairach_avi: Command not found. And then the program exits with errors. I looked in the transforms directory within my subjec

[Freesurfer] Error: Bad CPU type in executable.

2011-05-31 Thread ANN40
Hi, I recently downloaded and installed FreeSurfer on my Mac and I am having some trouble. I followed the instructions and the installation menu said that everything had been installed correctly. However, when I tried testing if everything worked using the commands provided on the FreesurferWiki