Re: [Freesurfer] subcortseg error - ?h.white surfaces not available

2013-03-21 Thread A. Yamamoto
segstats from the previous version 5.1.0? > Or, is the "-subcortseg" flag no longer supported > in v5.2.0? > > 2. Any workaround for the use of "-sobcortseg" just after completing > autorecon1 in v5.2.0? > > > Thanks for your help. > Akio > &

Re: [Freesurfer] subcortseg error - ?h.white surfaces not available

2013-03-18 Thread A. Yamamoto
kio > > what was your full command line? > > cheers > Bruce > > > On Mon, 18 Mar 2013, A. Yamamoto wrote: > > Hi, >> >> After upgrading to FreeSurfer 5.2.0, the command with "-subcortseg" flag >> exited with the following error. >> >

[Freesurfer] subcortseg error - ?h.white surfaces not available

2013-03-17 Thread A. Yamamoto
Hi, After upgrading to FreeSurfer 5.2.0, the command with "-subcortseg" flag exited with the following error. MRISread(/usr/local/freesurfer/5.2.0/dist/subjects/test/surf/lh.white): could not open file I confirmed that the "-autorecon1" stage finished without error. In v5.1.0 it worked fine, so

[Freesurfer] subcortseg flag

2013-03-15 Thread A. Yamamoto
Hi, After upgrading to FreeSurfer 5.2.0, the command with "-subcortseg" flag exited with the following error. MRISread(/usr/local/freesurfer/5.2.0/dist/subjects/test/surf/lh.white): could not open file The "-autorecon1" stage finished without error, so I'm wondering if there is any change in mr