[Freesurfer] Conference: Thalamocortical networks, May 16-17 San Sebastian, Spain

2024-02-28 Thread
External Email - Use Caution We are pleased to announce "*Thalamocortical networks (ThalNet): Bringing together cellular and cognitive neuroscience*", which will take place in person this *May 16-17 *at the Miramar Palace in *Donostia–San Sebastián*: https://secure-web.cisco.com/1O

[Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline

2023-05-09 Thread
External Email - Use Caution Hello FreeSurfer Developers, Some T1s we collected have higher intensity in the occipital cortex. The default recon-all failed skull stripping and wm/gm segmentation in that part of the brain. After several tests, we found that doing ants N4 bias field

[Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline

2023-05-03 Thread
External Email - Use Caution Hello FreeSurfer Developers, Some T1s we collected have higher intensity in the occipital cortex. The default recon-all failed skull stripping and wm/gm segmentation in that part of the brain. After several tests, we found that doing ants N4 bias field

Re: [Freesurfer] midline to cut the brain stem into Left and Right

2020-09-02 Thread
External Email - Use Caution Thanks Doug, Is there a function in freesurfer that allows to cut a ROI by the coordinates? On Wed, Sep 2, 2020 at 4:15 PM Douglas N. Greve wrote: > yes, seems good > > On 9/2/2020 2:40 AM, 刘梦醒 wrote: > > External Emai

Re: [Freesurfer] midline to cut the brain stem into Left and Right

2020-09-01 Thread
t; > > > > What is TLRC? Otherwise, it sounds reasonable. I'd definitely look > > at the image to make sure:) > > > > > > > On 9/1/2020 12:11 PM, 刘梦醒 wrote: > > > > > > > > > External Email - Use > > Cau

Re: [Freesurfer] midline to cut the brain stem into Left and Right

2020-09-01 Thread
and right, by x>0 and x<0, then I use the inverse matrix to translate the left and right brain stem back. How do you feel about this? Many thanks! Mengxing On Tue, Sep 1, 2020 at 4:42 PM Douglas Greve wrote: > Not that I know of, sorry > > On 9/1/20 10:20 AM, 刘梦醒 wrote: >

[Freesurfer] midline to cut the brain stem into Left and Right

2020-09-01 Thread
External Email - Use Caution Hi Freesurfer group, For some reason, I have to use the left and right brain stem separately. I wonder if there is one way to have a midline, to cut the brain stem into Left and Right? Many thanks, Mengxing