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Hi Victor,
Based on the rest of your command arguments -- you might be looking for
mri_annotation2label instead of mris_anatomical_stats.
-Adam
--
*Adam Martersteck, PhD *
*(he/him)**Assistant Professor of Neurology* | The University of Chicago,
Heal
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Hi all,
For FS7.1.1, the previous commands for extracting annot files for lobeStrict
was:
mris_anatomical_stats --s sub-001_1 --hemi rh --lobesStrict rh.lobesStrict
Seems like this command doesn't work anymore at least in FS7.4.1.
What is the currre
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Hello FreeSurfer Developers,
I try using SAMSEG for my subjects' data. I acquired 3 subjects in 3
different months and everytime I wanted to use samseg for brain
segmentation I encountered "zsh: command not found" and found myself in
the need to re-do
I see 'subjid sub-AH002_ses-01_T1w.nii' in your attached recon-all.log. I think
mri_synthseg is confused about the '.nii' in your subjid. Can you change it to
"_nii" and try again?
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Lubig, Andreas
Sent: Wednesday, March 5, 2025 1
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Additional info:
The "fslhd" info I provided you in the last email was based on the original
input file.
Thank you,
Andreas Lubig
Von: freesurfer-boun...@nmr.mgh.harvard.edu
im Auftrag von Lubig, Andreas
Gesendet
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Dear freesurfer team,
I just tried to run recon-all on my T1 weighted images with the new freesurfer
8 version, but unfortunately the analysis stops with an error (it worked
without any error using freesurfer 7). I've searched the list and no similar
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