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We want to perform appearance-based analysis that also takes advantage of
automated outputs, especially segmentations. For this, we have considered
different options: raw image, orig.mgz, norm.mgz, T1.mgz, in addition to
whether to use base or long pipe
I’m not sure what happened. I see you have three mri_convert runs. Each time it
behaves differently.
Can you try the following without invoking your makefile?
1. install Freesurfer 7.4.1
2. register and get a license file, put it in your home directory. set
FS_LICENSE environment variable
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Please try setting the environment variable listed below, e.g., in bash shell,
and then try running the command again with the 8.0.0 beta release. The
error output may provide more info. You could also try running the
command with the freesurfer 7
Dear FreeSurfer developers,
I am attempting to use “mri_vol2surf” command to project output from diffusion
MRI models (e.g., DTI) onto the cortical surface.
The registration between the diffusion MRI and anatomical space was performed
using “bbregister”, and the projection works well for diffe
Thanks for the insight on that. The lab is going to be working through a run of
it manually to see what they come across. I am still hung up a bit on the fact
that during the runs, commands from freesurfer/bin are being deleted - I guess
It could be from the makefile issue but seems unlikely sin
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The signal 9 error can mean the OS killed the process running the command
because it was using too much of some system resource, e.g.,
memory. You might want to bring up your activity monitor before
running the command and look at memory usage, esp
Hi M,
You can create a set by merging scans of the same subject across timepoints,
but that set would not be considered independent.
Independence in this context means the occurrence of one element would not have
any effect on any other element in the set, but this would not hold in this
case.
