Re: [Freesurfer] NextBrain - CUDA out of memory error

2024-11-08 Thread Iglesias Gonzalez, Juan E.
Dear Nárlon Thanks for the interest in our work! You have several options: 1. If it’s only a couple of subjects, you could bite the bullet and run them on the CPU. It’ll be slow, but hey, easy to run (just add the --cpu flag). 2. Changing the resolution at which the segmentations are genera

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Martin Kavec
External Email - Use Caution Hi Malte, indeed the -g helped to execute on GPU, but it exhausted my resources. Have only 23GB on GPU :( Thanks and best wishes, Martin On Fri, Nov 8, 2024 at 1:34 PM Hoffmann, Malte,PhD wrote: > > Hi Martin, > > In addition to the --gpu=all or 0

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Hoffmann, Malte,PhD
Hi Martin, In addition to the --gpu=all or 0 flag for Docker, you'll need to include the -g flag for SynthMorph to enable the GPU. You can choose the device by setting CUDA_VISIBLE_DEVICES; SynthMorph will default to 0. Affine registration should require at least 16 GB of device memory, and the

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Martin Kavec
External Email - Use Caution Hi, Thanks a lot. I am particularly excited to the Synth* tools. I am trying SynthMorph from docker. I see that it does not use GPU (nvtop). I tried adding —gpus=0 but still see that inference runs on CPU (htop). Are there any experiences in register

[Freesurfer] MD5 mismatch on one release

2024-11-08 Thread ali rahimi
External Email - Use Caution Hello FreeSurfer Developers, Firstly, Thanks for your great work. Two different releases have the same MD5 hash "1f107c22eb75821e1aa46b55a6eb8189", namely freesurfer_ubuntu20-7.4.0_amd64.deb (Correct one) freesurfer_ubuntu20-7.3.2_amd64.deb (MD5 b2d0