Re: [Freesurfer] [WARNING: ATTACHMENT UNSCANNED]Re: mri_convert: Command terminated by signal 9

2024-11-06 Thread Huang, Yujing
The attached recon-all log is empty. What is your recon-all command line? It sounds like you have both FS 7.1.1 and FS 7.4.1 installed on your system. The correct Freesurfer environment needs to be sourced before running recon-all - https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Li

[Freesurfer] [WARNING: ATTACHMENT UNSCANNED]Re: mri_convert: Command terminated by signal 9

2024-11-06 Thread Jeffrey Neal
Hello Freesurfer Developers,I am working with a lab who is trying to use freesurfer command: Make recon-all -k which fails with: command terminated by signal 9. If we try re-running it, we have to remove the folder created by it before we can re-run the command again, which will then report missing

[Freesurfer] Synthstrip error in FS v. 8.0.0 beta

2024-11-06 Thread Raikes, Adam C - (adamraikes)
External Email - Use Caution Hello Developers, I was attempting to test out the beta version of 8.0.0 and I recognize that this is on-going development. I installed it in a Singularity image running Ubuntu 22.04. Getting recon-all to run at all requires setting an environmental