Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread r04458005
External Email - Use Caution Dear Malte, I am currently utilizing the Docker version of SynthMorph 2 for MNI space normalization and have encountered a technical issue I hope you can assist me with. Below, I have detailed the command line used in my attempt: (GBM) chang@cha

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread Hoffmann, Malte,PhD
The displacement field stored will be the same, so I would say the file format shouldn't really matter. Malte From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Antoine Royer Sent: Saturday, May 4, 2024 15:06 To: freesurfer@nmr.mgh.harvard.edu S

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread Antoine Royer
External Email - Use Caution Thanks Malte! Would you recommend anything between saving deform transforms generated from synthmorph, between .mgz or .nii.gz? Which in my case, are expected to be passed onto mri_warp_convert for itk conversion. I'm running numerous tests trying t