Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-04-20 Thread Antoine Royer
External Email - Use Caution Thank you very much!! De : freesurfer-boun...@nmr.mgh.harvard.edu de la part de Hoffmann, Malte,PhD Envoyé : 20 avril 2024 11:16 À : freesurfer@nmr.mgh.harvard.edu Objet : Re: [Freesurfer] Understanding registration

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-04-20 Thread Hoffmann, Malte,PhD
Hi Antoine, Thanks for reaching out. Unless you're using a dev build of FreeSurfer, mri_synthmorph may lag behind the dockerized version, which is likely why you see a different behavior. For affine transforms, we switched to LTA format to track the source and target spaces. SynthMorph now save

[Freesurfer] Retinotopy error computing contrast matrices

2024-04-20 Thread Mesquita, Tiago
External Email - Use Caution Hello FreeSurfer Developers, I am trying to do a retinotopy analysis. My retinotopy has 8 bars, this bars swipe the visual field from the 8 possible directions (all multiple of 45 degrees angle). One complete swipe takes 24 sec. I have 16 different p