[Freesurfer] Understanding registration with mri_synthmorph

External Email - Use Caution Hi all! I am working on implementing some freesurfer synth tools into a larger diffusion processing pipeline. Doing so, I would like to use mri_synthmorph to generate a transform and then pass it downstream. FIrstly, I use the dockerized synthmorph

Re: [Freesurfer] editing segmentations from recon-all-clinical

Hello Agata, From my limited knowledge, it is not possible to update the segmentations and re-run the recons at this point. Karthik On Apr 5, 2024, at 10:31 AM, Agata Wolna wrote: External Email - Use Caution Hi! I have a question regarding the recon-all-clinical pipeline: is it po

[Freesurfer] Postdoc position: MRI of brain networks in developmental neuropsychiatry

External Email - Use Caution Postdoc position in multimodal imaging of brain structural networks within developmental neuropsychiatry The Danish Research Centre for Magnetic Resonance (DRCMR) at Copenhagen University Hospital Hvidovre (Denmark) is seeking a 3-year postdoc in mu

[Freesurfer] 250 Voxels Won't Stay Erased from wm.mgz Upon Relaunch

External Email - Use Caution Hey FreeSurfer Support, Recently I've been seeing some pial extensions into the subcortical region in FreeSurfer 7.3.2 which cause subcortical segmentation errors in the hippocampus. Turning on wm.mgz, I see erroneous bands of 250 voxels that seem to