Dear Sam,
The native images live in one space (typically anisotropic), whereas the
recon-all-clinical files always live in their own 1x1x1mm isotropic grid (which
is the whole point!). I am not familiar with the Enigma QC procedure but I
wouldn’t be surprised if it’s not compatible with these va
Hi again, Edward.
I would totally run mri_synthsr on the images to “wipe” the tumors, register
those images, and apply the fields to the original scans :-)
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Edward Su
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Dear freesufer experts,
Does anyone know whether infantFreesurfer is ready to use for publication
purposes? Thank you! Knut Jørgen Bjuland, PhD Telemark Hospital
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Thanks for clarifying, Edward. I'm afraid this is not currently implemented and
would likely require retraining with a specifically labeled dataset and/or a
new architecture that could take in masks at test time.
That being said, these methods don't optimize at registration time and have
been t
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Hi!
I have a question regarding the recon-all-clinical pipeline: is it possible
to edit the outputs of the synthseg segmentation run as a part of the
pipeline (synthseg.mgz) similarly to editing recons from the standard
freesurfer pipeline, and getting
