In our cluster testing, we allocate at least 16G to each recon-all command (see
below). We run about 150 of those commands in parallel on the cluster during
off-peak usage and it takes about 12 hours for them to complete.
$ jobsubmit -A fsm -p basic -t 1-00:00:00 -m 16G "recon-all -all -s 0042
Hi Yilei,
I think "nu_correct: Command not found. FREESURFER: Undefined variable." is
unrelated to your recon-all didn't finish. That error happens in the beginning
of recon-all and recon-all uses ANTS N4BiasFieldCorrection for nu correct
instead. We have addressed this error in our dev version
