[Freesurfer] mri_synthseg fails with current model files (was Re: Support Request NextBrain)

2024-02-28 Thread fsbuild
External Email - Use Caution I don’t believe the workaround will be supported or provided with future releases intended to run on Silicon Macs.  If there is still an issue with mri_synthseg running with the current model files in the freesurfer dev build, then please let us know

Re: [Freesurfer] Longitudinal Freesurfer in the presence of large tissue defects

2024-02-28 Thread Philip P
External Email - Use Caution Hi Malte, Thanks for the response, it’s encouraging to hear you think the longitudinal pipeline will still provide benefits, even in the absence of a non-linear template! However out of interest: I was able to generate a non-linear unbiased sessio

Re: [Freesurfer] Support Request NextBrain

2024-02-28 Thread fsbuild
External Email - Use Caution  The mri_synthseg script and python in the freesurfer disrtibution you are running are not entirely compatible with the arm64 M1, M2, M3 processors in silicon Macs.   You could try installing and running the development build of Freesurfer for the si

[Freesurfer] Conference: Thalamocortical networks, May 16-17 San Sebastian, Spain

2024-02-28 Thread 刘梦醒
External Email - Use Caution We are pleased to announce "*Thalamocortical networks (ThalNet): Bringing together cellular and cognitive neuroscience*", which will take place in person this *May 16-17 *at the Miramar Palace in *Donostia–San Sebastián*: https://secure-web.cisco.com/1O

Re: [Freesurfer] Creating a custom registration template with FreeSurfer template

2024-02-28 Thread Asuka Toyofuku
External Email - Use Caution Hi, thanks for your suggestion. I added .mgh at the end of the input and output file, but I got a different type of error. for d in Teen* > do mris_preproc --surfreg sphere.reg.teenheart_average_template.mgh --s $d > --hemi lh --out lh.surfreg.teenh