[Freesurfer] dmri_pathstats error: segmentation fault after check the number of non-truncated streamlines

External Email - Use Caution Hello FreeSurfer Developers, Recently I try to input following code to project the fiber endpoint to the surface. It can generate a label file but its position in surface is wrong ( it is displayed in the parietal lobe while the fiber is in the occi

Re: [Freesurfer] Infant fs

External Email - Use Caution  Sorry I cannot address those questions for you, but I have sent your email along to one of the developers. - R. On Jan 8, 2024, at 19:17, Amrita Pal wrote:External Email - Use CautionThanks. I had filled o

Re: [Freesurfer] Infant fs

External Email - Use Caution Thanks. I had filled out the form. How long do they take to respond? Also can I do subcortical thalamic segmentation with it? How is the LUT calculated both for infants and adults? Would you recommend an eleven year old's data analyzed by regular FS or

Re: [Freesurfer] Infant fs

External Email - Use Caution  Looks like you need to fill out the request form, https://secure-web.cisco.com/1Zztv_hv2CHwkWkqDcQ75P0iZ5m3guJnkq6OOGA_AuaX-IiyZb0WPr8KCpekneZq3xdVmuMPM23fTG3Ht7xu0ZxxuE7lX3v7MtXKhOYdch26VavRXmE4TYyFgzUtcfZ8Mh10uPUrEamBqumy-FNcsmw7X_b2F1UYP4c2d7gcvt63c

[Freesurfer] Infant fs

External Email - Use Caution Hello I am trying to use the infant fs for processing my pediatric data. Where can I download the package? Thanks and Regards Amrita ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nm

Re: [Freesurfer] Subject does not have a bstampfile

External Email - Use Caution   Let me add that it will not work to use shared mount point from the Windows filesystem as you list below, /mnt/c/Users/GCM/Desktop/subjects/NowakG/mri - for your SUBJECTS_DIR when running a recon-all command.  The command will fail because the Wind

Re: [Freesurfer] Subject does not have a bstampfile

You need to specify the input files to process. Here is the wiki page for recon-all - https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all Best, Yujing -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Joanna Kidon Sent: Monday, January 8, 2024 3:33 PM To: f

[Freesurfer] Subject does not have a bstampfile

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to compute Segmentation of hippocampal subfields and nuclei of the amygdala (cross-sectional and longitudinal), as described on the https://secure-web.cisco.com/1thysYb_zO3z1vpgSTaPhhhrJHE6mFgjDwcJg3vFCVfZ

[Freesurfer] Issue with mri_glmfit-sim

Hello FS community, To correct for multiple comparisons for the results of a parametric modulation GLM analysis, I have run mri_glmfit-sim using Freesurfer version 6.0 with the following command: mri_glmfit-sim \ --debug --glmdir /cluster/eryilmaz/users/NFE/NFE_Subjects_ago/Analyses_NFE/18_NFE