External Email - Use Caution
Dear freesurfer experts,
recently I update freesurfer to freesurfer 7.4.0 under Ubuntu 20.04. when I try
to launch freeview, I get error message as:
freeview
This application failed to start because no Qt platform plugin could be
initialized. Reins
External Email - Use Caution
For the sclimbic, you can find it in $FREESURFER/models/sclimbic.ctab
For the brainstem, the labels are in the main FS table,
$FREESURFER/FreeSurferColorLUT.txt
I think there are only three labels in the brainstem, so you can load it
into freeview to
External Email - Use Caution
Hi Malav, try
mris_diff --min-dist lh.wm.smth5 lh.pial.smth5 1 lh.thickness
The output will be on the pial surface. Reverse the surface order to get
it on the white surface
doug
On 5/22/2023 5:48 AM, Malav Shah wrote:
External Email - Use
External Email - Use Caution
you can make individual surface files (mri_binarize --match 16 --i
aseg.mgz --surf brainstem.surf --surf-smooth 2), but there is not a
registration target to register the surface to
On 5/21/2023 3:41 AM, t...@ms36.hinet.net wrote:
External
External Email - Use Caution
Hello,
I am Chi-Hyeon, a postdoc at the Martinos Center.
One of my colleagues wants to try to use advance segmentations: brainstem
substructures segmentation
(https://secure-web.cisco.com/10i08joHQng6yy87_-Iv618kYQPXRW-hpxjKH9kcjO2KOqVvlM4Qc6B8P72pJ
External Email - Use Caution
Dear freeSurfer team,
I am trying to extract cortical thickness in a postmortem elephant (structural)
MRI scan.
I initiated the process with the segmentation of white (wm) and pial matter,
using MATLAB image processing tools.
Having satisfied whit
