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You can use mris_convert between the formats.
Matt.
From: on behalf of Aaron Tanenbaum
Reply-To: Freesurfer support list
Date: Friday, March 3, 2023 at 8:59 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Apply a nonlinear transform to a
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Dear Freesurfer
My name is nan from Thailand and I’m interest in Freesurfer software but I
can’t learn from the begin by myself. I’m confused. so please, can you ad rise
me in the begin point of this Freesurfer or some course to learn.Thankyou
Sinc
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I think that only works for gifti files. I need it in freesurfer
coordinates. Thank you for responding.
On Fri, Mar 3, 2023, 7:30 PM Glasser, Matt wrote:
> External Email - Use Caution
>
> You can do this with wb_command. Dunno if FreeSurfer
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You can do this with wb_command. Dunno if FreeSurfer offers this.
Matt.
From: on behalf of Aaron Tanenbaum
Reply-To: Freesurfer support list
Date: Friday, March 3, 2023 at 7:26 PM
To: Freesurfer
Subject: [Freesurfer] Apply a nonlinear transform
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I am working on a project that will involve applying nonlinear work to a
freesurfer surface. This project is in its infancy. I have not figured
out all the details. The nonlinear transform will be in either FNIRT or
ANTS format. Does anyone know how
Hi Zuha, I'm not the person who can give permission. I think the license
allows you to use the software in the way that you are describing. I'm
cc'ing Heonick Ha, one of the MGH licensing lawyers, who should be able
to tell you definitively.
best
doug
On 3/3/2023 3:30 AM, Zuha Junaidi wrote:
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Dear Dr. Nolan,
Thank you so much for your help; I really appreciate it.
I’m currently using a heat color map for brainmask.mgz and the grayscale color
map for T1.mgz.
After shading (step 4), should I expect to see the newly cloned voxels (perhaps
