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Hello Joann,
If I read correctly, you are doing a remote mount of a shared network
drive to your Mac to store/read/write the subject files but running the
recon-all using your Mac processors.
You might want to check the directory for the last subject
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Hello,
I am attempting to analyze some structural morphometry data. I am having issues
with the recon-all command that I am using. I am attempting to run this command
on a shared network folder through my institution. Here is the exact command I
Hi Haiyun,
You can convert lh.pial.native to GIFTI using mris_convert - mris_convert
lh.pial.native lh.pial.native.gii
Hope this helps.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Haiyun Chen
Sent: Monday, November 7, 2022 12:08 PM
To: freesurfer@nmr.mgh.harvard.e
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Hi, I have a dataset i have run with the default settings of Freesurfer
6.0. A reviewer for a paper recently raised the question "Were T1 images
warped with the grey matter preserved? Were volumetric images for the
amygdala and hippocampus smoothed?"
I
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Hello FreeSurfer Experts,
Could you help to tell how can
we convert the file lh.pial.native
to Nifti file or Dicom file?
The file lh.pial.native is generated
by FreeSurfer as mentioned in your
website:
https://secure-web.cisco.com/1OqLwwMukRA3gBsB4xIy
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Dear Freesurfer experts,
I have a question about hippocampal segmentation. For the hippocampal mask
after completing recon-all, is it purely gray matter or does it also
include some aspects of white matter and others? Please advise.
Best,
JW
_
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Hello,
Does anybody know what happened to the recon-all option -contrasurfreg.
It is still documented, but recon-all crashes when trying to use it
("ERROR: Flag -contrasurfreg unrecognized.")
How can we obtain the files lh.rh.sphere.reg and rh.lh.sphe
