[Freesurfer] How to verify that cortical surface orientation volume w/ respect to b0 is accurate?

External Email - Use Caution I have created a volume which is supposed to have the cortical surface orientation with respect to b0 at each voxel. To do this I got the 6 frame overlay file from mris_convert. Then I isolated the first 3 values from each row in Matlab to create an

[Freesurfer] Assistant Professor in Cognitive Neuroscience at UW-Milwaukee

External Email - Use Caution The University of Wisconsin-Milwaukee (UWM) is seeking applicants for a tenure-track faculty position in Cognitive Neuroscience. UWM is a Carnegie “Research 1” institution located in Wisconsin’s cultural and economic center. We are interested in recr

[Freesurfer] tissue type not set in mri_compute_volume_fractions

External Email - Use Caution Dear Freesurfer experts, I’m trying to get a 5TT output from freesurfer data as FSL would provide it using MRtrix wrapper 5ttgen fsl. mri_compute_volume_fractions looks like doing the job, but I can’t wrap my head around some tissue type that seemed

Re: [Freesurfer] White matter normalization of FLAIR images

External Email - Use Caution Dear Dr Bruce, Thank you very much for answering my questions and for help. We highly appreciate you. All the best James 1. Sigma is the smoothing kernel applied to the bias field so you can make it pretty large depending on how high frequency y