Re: [Freesurfer] Freeview Closes Unexpectedly

2022-08-04 Thread fsbuild
External Email - Use Caution You need to use the sudo command to modify something under /Applications, so you could do$ sudo cp ~/Downloads/license.txt /Applications/freesurfer You could also just set FS_LICENSE to point to license.txt% setenv FS_LICENSE  ~/Downloads/license.txt

Re: [Freesurfer] Freeview Closes Unexpectedly

2022-08-04 Thread _ _
External Email - Use Caution Thank you! When I try to copy the license.txt file I receive this: % cp ~/Downloads/license.txt /Applications/freesurfer cp: /Applications/freesurfer/license.txt: Permission denied How can this be resolved? On Fri, Jul 22, 2022 at 6:37 AM Wang,

[Freesurfer] Sclimbic segmentation fault error?

2022-08-04 Thread Zeng, Victor (BIDMC - Keshavan - Psychiatry)
External Email - Use Caution Hi all, I am receiving this error when trying to run sclimbic module. It's not being very descriptive about what the error is so I was wondering if you all can help debug. My SUBJECTS_DIR is correct mri_sclimbic_seg --s GP0050 /usr/local/freesurfer/

Re: [Freesurfer] Tracula Config file.

2022-08-04 Thread Alan Francis
External Email - Use Caution Hi Anastasia - Thank you so much. I will do as you suggested. best wishes Alan On Thu, Aug 4, 2022 at 12:04 PM Yendiki, Anastasia wrote: > Hi Alan - dcmroot is the root directory under which the dicom files are > saved. It's actually optional. In

Re: [Freesurfer] Tracula Config file.

2022-08-04 Thread Yendiki, Anastasia
Hi Alan - dcmroot is the root directory under which the dicom files are saved. It's actually optional. In your case, either of the following will have the same, correct effect: set dcmroot = /home/afrancis/Imaging set dcmlist = (109123/109123_7T_DWI_dir72_AP_SBRef.nii.gz) OR set dcmlist = (/h

[Freesurfer] Tracula Config file.

2022-08-04 Thread Alan Francis
External Email - Use Caution Hi Anastasia - Hope you are well. I am running tracula on FS 7.2. I created the RC file based on your recommendations. However it is giving me an error message when I run it. The error is : Unmatched ' " " I have attached the RC file. Could you please

[Freesurfer] Postdoc position available at FS team (NIH BRAIN Initiative project)

2022-08-04 Thread Iglesias Gonzalez, Juan E.
Dear all, Prof. Fischl and I are looking for a postdoc to work on a multi-site, international project (18 institutions, 3 continents) sponsored by the NIH BRAIN Initiative. Details on the project, position, and application here: https://scholar.harvard.edu/iglesias/jobs Cheers, Juan Eugenio I