[Freesurfer] Freesurfer VM password

External Email - Use Caution Hello! I just downloaded the FS_7_2_0_ubuntu_18_04_06.ova.7z and would like to see if I can get the password to unzip this VM? Thanks a lot, Zixuan. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.ed

Re: [Freesurfer] How to project SPM image

I see, and what's wrong with the screen shot you have? (and "Bruce" is fine). From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Rachel Wagner Sent: Sunday, July 3, 2022 7:41 PM To: Freesurfer support list Subject: Re: [Freesurfer] How to project SPM image External Email - Use

Re: [Freesurfer] How to project SPM image

External Email - Use Caution Hi Dr. Fischl, My apologies, I don’t have much of a background in software generally! For the SPM image, I used the AAL atlas to label lesioned brain regions and colored by frequency to generate the heatmap. Image dimensions: 1x1x1, Image Size [91 1

Re: [Freesurfer] trac-all -prep -c ERROR

Is the brainstem cut off from the diffusion scan? A bit hard to tell from the pics but this could be the problem. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Salar Dini, Elaheh Sent: Thursday, June 30, 2022 7:58 PM To: Freesurfer support list Sub

Re: [Freesurfer] How to project SPM image

Can you give us more details? How did you create the rReslice_Combined_roi_meanRD.nii? What resolution is it? And how are you trying to display it? On an average surface? Why are you mapping it to bert and not fsaverage? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Rachel Wagner

Re: [Freesurfer] How to project SPM image

External Email - Use Caution Hello Dr. Fischl, thank you for your reply, it is much appreciated. I am trying to cortically project my spm lesion location/frequency map, according to instructions linked here: AnalyzingData/MNE_SPM2Freesurfer - Meg Wiki (cam.ac.uk)

Re: [Freesurfer] segmentation corpus callosum

Sure, just run your subject through recon-all, then use mri_binarize or mri_extract_label to pull the cc labels out of the aseg. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Mostafa Fakhri Sent: Sunday, July 3, 2022 1:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject:

[Freesurfer] segmentation corpus callosum

External Email - Use Caution Hello to all, I was wondering if I could create a binary mask of corpus callosum from T1w images in subject space with FS. Thanks for the help! Mostafa ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard

[Freesurfer] Pass code for FS_7_2_0_Ubuntu_18_04_06.ova.7z

Hello, I am downloading Freesurfer on my Windows device; may I please have the pass code to expand the archive FS_7_2_0_Ubuntu_18_04_06.ova.7z Thank you kindly ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu