Re: [Freesurfer] slice timing for multiband fMRI

External Email - Use Caution Are there any suggestions regarding this topic? Am Montag, 28. März 2022 09:21 CEST, "Laura Doll" schrieb: > External Email - Use Caution > > Hi everyone, > > We are currently piloting an fMRI measurement with multiband sequenc

Re: [Freesurfer] illegal instruction 4 Mac M1

External Email - Use Caution Hello Miriam, I can reproduce your error running mri_sclimbic_seg on an M1 Mac running MacOS BigSur with the latest freesurfer development build.  We will look into this and see what can be done. - R. On Mar 31, 2022, at 16:14, Miriam Taza

[Freesurfer] illegal instruction 4 Mac M1

External Email - Use Caution Hello, I am trying to run mri_sclimbic_seg command using dev version of freesurfer on my macbook pro m1 max (monterey version 12.2.1) and I keep getting illegal instruction: 4 (here is the output) /Applications/freesurfer/python/scripts/mri_sclimbi

Re: [Freesurfer] Tracula fsl commands fail in Freesurfer docker

External Email - Use Caution Hi Clément The container `freesurfer/freesurfer:7.2.0` simply installs freesurfer into a docker container, and does not support use cases that require additional software. There are a couple options. You could create your own container, which derives

[Freesurfer] Tracula fsl commands fail in Freesurfer docker

External Email - Use Caution Hi, I am trying to use tracula within the freesurfer docker (freesurfer:7.2.0) but some commands related to fsl fail because the fsl script is not found. For example, within the trac-preproc command, the subcommand bet /input/inputData/sub-010017/dm

Re: [Freesurfer] bedpostx error inside trac-all

External Email - Use Caution Thanks again for your quick response. I ran trac-all -prep, and I am now running bedpostx like you suggested. Will I need to create symlinks to tie together the trac-preproc outputs and the inputs expected by bedpostx? If so, would this be the approp

Re: [Freesurfer] mri_vol2vol anatomical to functional

External Email - Use Caution Hi Douglas, thank you for your time; I am trying to get the ribbon at functional space resolution (I need it to extract the white matter from my ROIs) Here I am copying the 2 commands (one using .reg file, the second using .lta) I am using, and the