[Freesurfer] WM error near the right putamen

External Email - Use Caution Dear all, fswiki suggests that " There are regions where the surfaces are not intended to be accurate that you should be aware of: Areas around the hippocampus and amygdala. " I also found inaccuracy of the WM surface near the putamen and accumbens re

Re: [Freesurfer] Tkregister2 not opening GUI

External Email - Use Caution I did try tkregisterfv, but I get the following error: cannot find /Volumes/RestingState/fMRI/fMRI/Freesurfer/S0010_FS/surf/lh.white [MacBook-Pro-4:~] Isa% tkregisterfv --fstal --s S0010_FS According to the tutorial, if I leave the –surfs out, the com

Re: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask

External Email - Use Caution Hi Andrew, Thank you greatly for your quick response. In the process of implementing your solution, I came across another issue and hope that you could help me solve it. I went ahead and ran the SynthStrip script using singularity. This gave me newly