Re: [Freesurfer] Tracula 6.0 or 7.2 - sub in alternative metric maps

External Email - Use Caution Thank you so much for all of your help, Anastasia! Kayti Thorn (she/her) Database Specialist Medical University of South Carolina Department of Neurology Center for Biomedical Imaging 135 Cannon St. CS101 Charleston, SC 29425 From: freesurfer-boun..

Re: [Freesurfer] Tracula 6.0 or 7.2 - sub in alternative metric maps

Hi Kayti - This was the one: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg72181.html Anastasia. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Thorn, Kathryn Sent: Thursday, March 17, 2022 5:06 PM To: Freesurfer support list Subje

Re: [Freesurfer] Hippocampal segmentation Matlab crash

I’m not sure what the cause of this would be, unfortunately. The matlab runtime library errors become very difficult to track down. One thing you could do is try to run this in a singularity or docker container, if available on your cluster. You could use centos7 as the base image, and mount the

Re: [Freesurfer] run_samseg output folder permissions error

Hi Randy, As Koen mentioned, FS support for ushort file types wasn’t added until recently. I just extended that support to the python (samseg) tools yesterday, so this should work in the most recent development (nightly) freesurfer distributions. You could install that, or you could convert you