[Freesurfer] statistical analysis of the volume of the hypothalamus_seg

2022-01-12 Thread Xiaotong Zhang
External Email - Use Caution In the statistical analysis of the volume of the hypothalamus_seg, since the skull size of each person is different, it is necessary to exclude the influence of head size, that is, to regress the total intracranial volume, such as e TIV or sb TIV. I

[Freesurfer] The volume of some hypothalamus subunits is 0

2022-01-12 Thread Xiaotong Zhang
External Email - Use Caution Hello FreeSurfer Developers, When I used the FS.dev version for hypothalamus segmentation, I have segmented it sucessfully. Tensorflow-CPU has been installed to run this module (hypothalamus_seg). The .sh file was: for subj3 in 111 112 114...and 431

[Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized

2022-01-12 Thread Tarumi Takashi
External Email - Use Caution Dear FreeSurfer Developers: I am attempting to perform cluster-wise correction for the along-tract measures, as described on the Tract statistics tutorial ( https://secure-web.cisco.com/1k_UHTgDkMyztiBV5VO6PazEUkIHIp4tFCos8o1vMfT5XasrL80AhnLun3nO3Sbemu

Re: [Freesurfer] FS installation question ( help )

2022-01-12 Thread fsbuild
External Email - Use Caution Hello Jamie, If you are using the Windows Subsystem for Linux (WSL), you don't need to download the archive on the windows side and copy it over to Ubuntu linux through the mounted path..  I would try downloading the freesurfer 7.2.0 installer in

[Freesurfer] Postdoctoral Position – Neuroimage Analysis and Deep Learning

2022-01-12 Thread Gang Li
External Email - Use Caution A postdoctoral fellow position is available in the Department of Radiology and Biomedical Research Imaging Center at the University of North Carolina at Chapel Hill (UNC-Chapel Hill). Our current research focuses on the development and dissemination of

[Freesurfer] FS installation question ( help )

2022-01-12 Thread Ford, Jamie K
External Email - Use Caution Hi everyone, Please could someone please help me on some issues I'm having in trying to download FS with Linux (version 7.1.1)? In Ubuntu 18.04 LTS, I successfully ran: * cd /mnt/c/Users/[my Windows username]/Downloads * tar -zxvf freesurfe

[Freesurfer] PhD/Postdoc Positions in Cognitive Neuroscience and Neuroimaging Genomics at Zhejiang University (Hangzhou, China)

2022-01-12 Thread X K
External Email - Use Caution PhD/Postdoc positions are available to work on *multidisciplinary projects in cognitive neuroscience, neuroimaging and genomics*. The projects will involve analyzing large-scale neuroimaging datasets, behavioral and cognitive measures, early life experi

[Freesurfer] Brain anatomy research, tenure track position @ University of Trento, Italy

2022-01-12 Thread Jovicich, Jorge
External Email - Use Caution Great opportunity for human brain anatomy research at the new center for Medical Sciences, University of Trento, Italy. Tenure track academic position ("ricercatore tipo-B)". Italian fluency needed. More info:https://secure-web.cisco.com/1vzhVWZ9-O