[Freesurfer] SynthSR

2021-11-25 Thread AJ
External Email - Use Caution Hi, Could synthetic MRIs generated by the SynthSR script be potentially used to harmonize T1w weighted images acquired on different scanners? Then used harmonized images for volumetric analyses? Many thanks AJ __

[Freesurfer] FREESURFER Recon all problem

2021-11-25 Thread Alison McDonnell
External Email - Use Caution Hi I tried to running recon all on a large amount of data and got the below error message. the listed files that say the tag image orientation can't be found aer in the folder but seem to be blank. i was wondering is there a way to run recon all and ski