Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

2021-09-07 Thread Douglas N. Greve
yes, in the process now of upgrading. We'll use dcm2niix internally. On 9/7/2021 5:11 PM, Fischl, Bruce wrote: Our dicom reader is probably too old Bruce *From:* freesurfer-boun...@nmr.mgh.harvard.edu *On Behalf Of *Peled, Noam *Sent:* Tuesday, September 7, 2021 2:56 PM *To:* Freesurfer su

Re: [Freesurfer] Recon-all error: Label BA1_exvivo does not exist in SUBJECTS_DIR fsaverage

2021-09-07 Thread Szulia Agata
External Email - Use Caution Hi, I’m using macOS big sur 11.5.2. The file did exist and I do have read permissions; I also did resolve the problem eventually :) - I had a backup of fs and replaced the whole subject directory with it and now recon-all seems to be working fine. T

Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

2021-09-07 Thread Fischl, Bruce
Our dicom reader is probably too old Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Peled, Noam Sent: Tuesday, September 7, 2021 2:56 PM To: Freesurfer support list Subject: Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number Yes! Thanks! dmc2niix did the trick. I wo

Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

2021-09-07 Thread Peled, Noam
Yes! Thanks! dmc2niix did the trick. I wonder why mri_convert failed. Thanks! Noam From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce Sent: Thursday, September 2, 2021 12:44 PM To: Freesurfer support list Subject: Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd numb

Re: [Freesurfer] Issue with opening freeview

2021-09-07 Thread Wang, Ruopeng
Can you click on Show Details button and send us the whole crash report in the box? Ruopeng On Sep 7, 2021, at 10:30 AM, Eunbi Kwon mailto:eunbi.k...@northwestern.edu>> wrote: External Email - Use Caution Hello, I'm using freeview version 7.2.2 on my macOS Catalina (version 10.15.6),