Re: [Freesurfer] fs_install permission denied

External Email - Use Caution Hi Andrew, Thank you for the detailed instruction. The command provided by you works. Thank you! Best, JW ᐧ On Wed, Sep 1, 2021 at 9:46 PM Hoopes, Andrew wrote: > Are you adding sudo in front of every command? like this: > > > > cd $FREESURFER_HOME

Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

Hi Noam can you convert them with any dicom converter to any other format? dcm2nii? That kind of thing? Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Peled, Noam Sent: Thursday, September 2, 2021 12:19 PM To: Freesurfer support list Subject:

Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

Unfortunately, it’s patient data from another hospital, and I also can’t access the files. I’m just helping them to use FreeSurfer. Is there a debug version that outputs more information? The temp file (basuia.tmp.decompressed.dcm.yK9HZZ.dcmdjpeg) is empty. Thanks! Noam From: freesurfer-boun...

Re: [Freesurfer] recon-all Longitudinal processing (baseline on 1.5T; followup on 3T)

External Email - Use Caution Depends on the data analysis that you want to do, the magnetic field strength between the two scanners may be a problem that affects the intensity distribution of the image overall that lead to under- or over-estimation. See, the following paper as a

[Freesurfer] question for FREESURFER

External Email - Use Caution Hi, This is hyeyoung Park from Seoul National University in South Korea. I have one question about FREESURFER. I ran recon-all using terminal, and finally I got files such as aseg.stats and aparc.stats. For the next steps, I'd like to extract the measu

Re: [Freesurfer] recon-all Longitudinal processing (baseline on 1.5T; followup on 3T)

Hi Jay, that would be possible, but we have no experience with such a setting. The problem is that you will never know if any detected longitudinal change is due to the field strength/scanner/head coil chances or the changes in the way it is processed or real anatomical changes. This is why

Re: [Freesurfer] freeview: sh: 1: Syntax error: Bad fd number

Would it be possible to send me the dicom files? Ruopeng On Sep 1, 2021, at 1:14 PM, Peled, Noam mailto:npe...@mgh.harvard.edu>> wrote: The same error. Also, when trying to run recon-all on these files. Thanks, Noam From: freesurfer-boun...@nmr.mgh.harvard.edu

Re: [Freesurfer] matlab runtime error

External Email - Use Caution Hi Andrew, I commented out the LD_LIBRARY_PATH from my .bashrc and that worked. Thanks! Corinna On Wed, Sep 1, 2021 at 10:53 PM Hoopes, Andrew wrote: > Hi Corinna, > > Do you happen to have the LD_LIBRARY_PATH environment variable set in your > she

[Freesurfer] Question about freesurfer

External Email - Use Caution Hi, This is hyeyoung Park from Seoul National University in South Korea. I have one question about FREESURFER. I ran recon-all using terminal, and finally I got files such as aseg.stats and aparc.stats. For the next steps, I'd like to extract the measu