After running the longitudinal pipeline, it's still not registered well.
Doug, I don't think I should attach the figures here, but you take a look at
the registration here:
freeview mg150.long.mg150_base/mri/T1.mgz
mg150_postop.long.mg150_base/mri/T1.mgz
Where the folders are in
/autofs/space/mm
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Dear Dr. Iglesias,
Thank you for your kind reply.
My computer has 64GB of RAM.
I have listed below the detailed information about my computer's specifications
and
version of FreeSufer.
I would appreciate your advice.
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Dear FS developers,
I know how to use freeview to capture one static image and save it to a
file. For example, I can capture coronal view's slice 100 using this
command:
freeview \
-v $SUBJECTS_DIR/$subjectid/mri/orig.mgz \
-f $SUBJECTS_DIR/$ subjecti
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Hello,
Getting a list of the labels would be fantastic! Also, when relabeling the
segmentations, do you normally just do that by hand?
Thanks so much,
Colleen
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf
This was fixed in 7.11. You can use that version or copy the attached
file to this location
$FREESURFER_HOME/matlab/freesurfer_read_surf.m
On 5/11/2021 2:28 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
Hi,
I am using Matlab R2014a, and FS7.1.0
and receiving this error when I try
This is because it takes two passes through the transform. One takes
each target vertex and finds the closest source vertex. The other takes
each source vertex not already sampled and finds the closest target
vertex to make sure that every source is represented. With the 2nd step,
there may be
Hi,
I am using Matlab R2014a, and FS7.1.0
and receiving this error when I try to run -localGI. Is there a package I might
be missing? Or am I using an outdated version of Matlab?
=
mris_smooth -nw -n 30
/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp
Dear Daiki,
Could this be a RAM memory issue? How much RAM do you have on this machine?
Cheers,
Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May 11, 2021, at 06:16, 笹林大樹
mailto:ds...@med.u-toyama.ac.jp>> wrote:
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Hi Lara,
What container are you using? Is it `freesurfer/freesurfer:7.1.1`? Can you
share the docker run command you're using?
-Paul
On Mon, May 10, 2021 at 10:00 PM Lara Foland-Ross
wrote:
> External Email - Use Caution
>
> Sure. Here's t
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Hi experts,
I am trying to resample some surface overlays from fsaverage to fsaverage_sym
surface. I have used the following command:
mri_surf2surf --srcsubject fsaverage --srcsurfreg fsaverage_sym.sphere.reg
--trgsubject fsaverage_sym --trgsurfreg
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The lesion extension is memory hungry. The exact amount of RAM memory depends
on the size and resolution of the scans.
I'd say you need almost 16GB for 1mm (256x256x256) scans.
Best,
Stefano
From: Hoopes, Andrew
Sen
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Sorry I forgot the attachment.
Dr. Fabio Bernardoni
wiss. Mitarbeiter
Division of Psychological & Social Medicine and Developmental Neurosciences
http://secure-web.cisco.com/1UDjtXMiR-HBNL2ou7IruUgW_6SlVjUqDjtbi1gshAUd4B7XmsmBa9Z8UuleJB3EMDmn-chkMz2
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Dear Freesurfers,
when running the longitudinal preprocessing on a subject, I get the same error
as described here (see recon-all.log attached):
https://secure-web.cisco.com/1Ip5HtCg9MqyghYHl20NFxCMImoJoShIH1y6ytQEK2tKtD13Oz0AIBueggTl_ahZFc6uNPUz7V5A3
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