Re: [Freesurfer] Out of memory from longitudinal segmentation of hippocampus

2021-04-29 Thread Wei Shao
External Email - Use Caution Hello, Dear Freesufer experts I just thought of sending a friendly reminder - I am wondering if you had the time to go over my question? Best regards, Wei On Sat, Apr 24, 2021 at 2:26 PM Wei Shao wrote: > Hello, Dear FreeSurfer expert. > > I was t

[Freesurfer] FreeSurfer results for Allen Brain Atlas donors?

2021-04-29 Thread Keith Jamison
External Email - Use Caution I just came across this page that describes freesurfer outputs for the 6 Allen Brain Atlas donors: https://secure-web.cisco.com/1tWRubEIGq1Vc2e5IRFbcyZbKrPn8IuChYlWsqD8ClzjenaYv4DN-HZ1pIuJloftctjbQFq7JsmH4GSe7ma4J2qzOA1m68xqjd_83-C-JiJbBEALMyNGXdq9S5e

[Freesurfer] Cluster correction at subject level using -log10(p) values

2021-04-29 Thread Leonardo Tozzi
External Email - Use Caution Dear Experts, I am running an analysis where I have -log10(p) values on the cortical surface of some subjects stored as a MGH file. I would now like to run a cluster level correction on these data at the level of each individual subject using mri_mcs

Re: [Freesurfer] Freeview slow on CentOS 8 Stream

2021-04-29 Thread Torkil Svensgaard
External Email - Use Caution Hi It the same on every login server. Running locally inside at Thinlinc session. Mvh. Torkil On 29/04/2021 15.05, Wang, Ruopeng wrote: > So did all the issues happen on the same machine? Did your team run freeview > locally on the machine or via

Re: [Freesurfer] mris_anatomical_stats

2021-04-29 Thread Fischl, Bruce
Yes, I believe so depending on which parcellation you are using Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Nils B. Sent: Thursday, April 29, 2021 9:55 AM To: Freesurfer support list Subject: [Freesurfer] mris_anatomical_stats External Email - Use Caution Dear Supp

[Freesurfer] mris_anatomical_stats

2021-04-29 Thread Nils B.
External Email - Use Caution Dear Supportteam, I have a short question concerning the data produced by mris_anatomical_stats. The description on the anatomical structures is really short so I just wanted to ask if the precentral stats are for the precentral gyrus? Best regards,

Re: [Freesurfer] Freeview slow on CentOS 8 Stream

2021-04-29 Thread Wang, Ruopeng
So did all the issues happen on the same machine? Did your team run freeview locally on the machine or via remote X display? Ruopeng > On Apr 29, 2021, at 8:49 AM, Torkil Svensgaard wrote: > >External Email - Use Caution > > Hi again > > The user reports freeview being unusa

Re: [Freesurfer] Freeview slow on CentOS 8 Stream

2021-04-29 Thread Torkil Svensgaard
External Email - Use Caution Hi again The user reports freeview being unusable right off the bat this morning. He left it running in that state, is there anything I can do to capture something that might provide insights? Mvh. Torkil On 28/04/2021 21.24, Torkil Svensgaard wro