Re: [Freesurfer] Hippocampal Subfields Segmentation Violation-error

2021-03-27 Thread Hoopes, Andrew
Matt (cc’d) has recently posted a similar error on the last. Unfortunately, these mac MCR errors are difficult to debug. You could wait for the python subfield port to get released, but that might be a few months down the line. If you want to get things running immediately, one thing to try is t

Re: [Freesurfer] "ERROR: crypt() returned null with 4-line file" when running via Singularity

2021-03-27 Thread Hoopes, Andrew
Hi Katja, I wonder if this is related to possible security settings. I can’t replicate this, but can you send your license file so that we can narrow down the possibilities? You can send it directly to my email, off-list. Best Andrew From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of

Re: [Freesurfer] mri_label2vol - Questions about label file and missing voxels?

2021-03-27 Thread dvartak
External Email - Use Caution Hi Doug, Thank you for the explanation. It explains everything 😃 Cheers, Dev From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, March 25, 2021 7:10 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re:

Re: [Freesurfer] How to edit GM when WM is ok

2021-03-27 Thread Fischl, Bruce
Hi Carolin What did you name them? Also, we won’t really be able to diagnose things unless you upload the entire tarred/gzipped subject directory Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Caroline Chwiesko Sent: Friday, March 26, 2021 8:04 PM To: Freesurfer suppo