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Deer Freesurfer Experts,
We are trying to perform 3 group comaprison analysis in Freesurfer
(mri_glmfit). Our fixed factors are "group (Case1, Case2, Healthy)" and our
dependent variables are "thickness variables".We want to control "CPZ"
continuous
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Hi,
We are finding that the skull-stripping in standard FS 7.1.1. in a few of our
3yo subjects is a little aggressive and is removing brain from the brainmask
primarily in the occipital pole region. We decided to use the "cloning to T1
method",
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Hello,
I'm trying to convert label files containing probability values for
Brodmann areas (e.g. rh.BA1_exvivo.label) to volume files using
mri_label2vol.
I'd like to keep the probability value that's in the 5th column of the
label file into the vol
PS sorry for misspelling your name! It got autocorrected into Francisca and I
only noticed one of the wrong c:s
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of "Iglesias Gonzalez,
Juan E."
Reply-To: Freesurfer
Dear Franciska,
It’s hard to tell from a single plane, but it seems that dark voxels from the
ventricles are mixing with bright voxels from the corpus callosum, into gray
voxels looking like the pulvinar and medical nuclei.
Would you be able to share the whole subject so I can take a closer look?
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Dear Freesurfer experts,
I've been using Freesurfer 7 for only a few months. I've searched the list and
no similar observations have been reported.
For my project I used the "Segmentation of thalamic nuclei" tool by Iglesias,
J.E. et al.
The "recon-a
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Hi, I am attempting to run the Freesurfer Ubuntu virtual box but I need the
“Developed” password. Is it possible to have it?
Best
Mudathir
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