Re: [Freesurfer] making labels in Freeview/Freesurfer 7.1.1

2021-01-18 Thread Trisanna Sprung-Much
External Email - Use Caution thank you for your speedy response, Bruce! From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Fischl, Bruce Sent: Monday, January 18, 2021 6:22 PM To: Freesurfer support list Subject: Re: [Freesurfer] making

Re: [Freesurfer] making labels in Freeview/Freesurfer 7.1.1

2021-01-18 Thread Fischl, Bruce
Yes, that should work Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Trisanna Sprung-Much Sent: Monday, January 18, 2021 5:01 PM To: Freesurfer support list Subject: Re: [Freesurfer] making labels in Freeview/Freesurfer 7.1.1 External Email - Use Caution Hi there The

Re: [Freesurfer] making labels in Freeview/Freesurfer 7.1.1

2021-01-18 Thread Trisanna Sprung-Much
External Email - Use Caution Hi there There is likely a silly question but if one were to create a label on a white surface and wants to view it on the pial surface of the same subject, do we simply load the pial surface and the label? Does this give a precise visualization of

[Freesurfer] Recon-all log

2021-01-18 Thread Bohorquez Montoya, Luisa
External Email - Use Caution Good morning freesurfer, I am new using recon all. Would you mind to help me with this error I am getting? What should I do? Attached is the log and here is my command. recon-all \ -subject ${ANATDIR} \ -i ${ANATDIR}/${subject}/*Ax_FS

[Freesurfer] ROI Correlations

2021-01-18 Thread Swanson,Clayton
External Email - Use Caution Hi Freesurfer Folks, I am wondering if it is possible to perform an ROI correlation which can then be viewed on the brain similar to whole brain GLM analysis in Freeview. If so, how would I go about performing this type of operation as to specify tha

[Freesurfer] Issue with freeview display in ubuntu/Xming on windows 10: failed to get the current screen resources

2021-01-18 Thread josua . zimmermann
External Email - Use Caution Dear freesurfer experts, I installed freesurfer on ubuntu 18.04 (Windows 10), that uses Xming. Freesurfer seems to work fine. However, I have troubles with freeview. Freeview opens but I cannot display images. I get the following error message w

[Freesurfer] Holes in my ROIs

2021-01-18 Thread Alberto Del Cerro Leon
External Email - Use Caution Hello Freesurfers, I created surface image based on AAL with mri_vol2surf. However i see that in some regions there are a lot of holes, i thought that probably is for the presence of subcortical regions in the AAL.ni. There is some workflow to select th