Re: [Freesurfer] Infant FreeSurfer issues

Hi Florent, See for answers below. Lilla From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of k3...@free.fr Sent: Friday, October 2, 2020 4:30 AM To: Freesurfer support list Subject: [Freesurfer] Infant FreeSurfer issues External Email - Use Cauti

[Freesurfer] Graduate student positions available

External Email - Use Caution Greetings Freesurfer Community! The Cognitive and Brain Sciences (CBS) group in the Department of Psychology at the University of Nevada, Reno have graduate positions open for Fall 2021, specific

[Freesurfer] lh.white edits

External Email - Use Caution Hello FreeSurfer Developers, I am trying to make edits to the white matter segmentation. I have tried making edits to wm.mgz and repeating recon2-wm but I was wondering if there is a way to make direct edits to lh.white? I've searched the lists and

[Freesurfer] Tracula: Calculation of MD values from other eigenvectors

External Email - Use Caution Dear Tracula Experts, We are trying to address a question from a reviewer who is wondering why we included all of the average diffusion parameters in our model ( i.e. FA, MD,FA, RD, and AD) for distinguishing two groups of patients . The reviewer c

Re: [Freesurfer] Estimating the memory footprint of Longitudinal Stream?

External Email - Use Caution Thanks Doug. No need to add anything to mri_fuse_segmentations. I'll keep digging. -Paul On Mon, Oct 19, 2020 at 11:10 AM Douglas N. Greve wrote: > I don't know. Each command will have an fs_time output which will have a > measure of the peak memo

Re: [Freesurfer] please help me

External Email - Use Caution hi Thank you for your response I have 60 subject MRI that each  contains 174 dcm file. and i want predict age of these subjects. in step one i want extract morphology features and in step2 create a deep learning model that predict age. According to

Re: [Freesurfer] Freesurfer edits

External Email - Use Caution These outputs were generated using the regular pipeline 7.1.1 I tried the infant pipeline as well but results were less desirable. Get Outlook for Android From: freesurfer-boun...@nmr.mgh.harva

[Freesurfer] Traculina availability

External Email - Use Caution Good Morning! I understand that the stable release of TRACULInA will be included in the next version of freesurfer. Is there an estimate of when that will be? Or if there are any versions that are currently openly available for trial? Thank you and

Re: [Freesurfer] please help me

Nifty is a format that a lot of people use (including us) but it is not needed for our processing. Pick *one* file in your dicom series and pass it to recon-all: recon-all -i -s -sdir -all cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of saman fouladi Sent: Wednesda

[Freesurfer] Group Analysis: Comparing four groups

External Email - Use Caution Dear Freesurfer experts, This is the first time I perform group analysis in Freesurfer. My aim is to compare the cortical thickness in four groups matched in age, sex and years of education using the Monte Carlo multiple comparisons correction. I tried

Re: [Freesurfer] Freesurfer edits

Hi Jim, Did you use the infant or the regular pipeline here? Lilla From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Alexopoulos, Dimitrios Sent: Tuesday, October 20, 2020 11:24 AM To: Freesurfer support list Subject: [Freesurfer] Freesurfer edits