Hi Michele,
Does $FREESURFER_HOME/mni/bin/nu_correct exist for you? This error usually
indicates that you have not configured the freesurfer environment correctly.
Have you sourced the SetUpFreeSurfer script?
Best,
Andrew
From: on behalf of Michele Valotti
Reply-To: FS Help
Date: Wednesday
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No, it does not exist, and my question is why not in 7.1.0 when it is created
with the same two commands in 5.3.0?
Thanks,
Kathy
> Douglas N. Greve Fri, 09 Oct 2020 05:49:32 -0700
> does that file exist?
_
Hi there,
I obtained a seed region (left superior frontal)from anatomical data to process
resting state fMRI data as follows: fcseed-sess -o lh.SFC.dat -segid 1028 -s
session -fsd rest.
I wonder if what the seed region is the left superior frontal was correct.
Question1: Can I display the lh.SFC
Dear FreeSurfers - Join us today at 12pm EDT / 6pm CET for the IronTract
Challenge webinar/happy hour! Learn about this effort to assess tractography
methods objectively and get up to speed on how to participate by the deadline
of November 8. The webinar will include demos on how to submit your
aparc = automatic parcellation (surface-based)
wmparc = white matter segmentation based on aparc (volume-based)
aseg = automatic segmentation (volume-based)
On 10/8/2020 10:09 PM, Zhiyuan Yu wrote:
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Hi All,
I have seen aparc, wmparc, aseg frequently but I d
Try aparc.a2009s+aseg.mgz
On 10/9/2020 3:07 AM, Valentina Mancini wrote:
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Dear freesurfer experts,
I'm trying to display the results of a study on a brain with Desikan
and Killiany parcellation.
Currently, I use tksurfer fsaverage, load the aparc.anno
does that file exist?
On 10/8/2020 1:55 PM, Kathy L. Pearson wrote:
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>
> In freesurfer version 5.3.0, I can successfully run:
> recon-all -autorecon-all -mprage -s $subj -qcache -localGI
> recon-all -s $subj -qcache -measure pial_lgi
>
> However, th
You can standardize them yourself. rvar.mgh is the residual variance and
Xg is the design matrix. Between those and the beta values, you can
standarize the betas
On 10/7/2020 3:39 PM, Batool Rizvi wrote:
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Hi Dr. Greve,
Thank you for your response! Not sur
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Dear freesurfer experts,
I'm trying to display the results of a study on a brain with Desikan and
Killiany parcellation.
Currently, I use tksurfer fsaverage, load the aparc.annot annotation, modify
the colortable with values of interest and load i
