[Freesurfer] mri_surf2surf --projfrac error: cannot spec both --sval-xyz and --sval

External Email - Use Caution Hi, To begin with, I want clarify my goal here: I want to resample my resting-state functional data in fsaverage5 and then do some preprocessing before statistical analysis, and I get stuck in smooth now. I tried the following command: mri_surf2sur

Re: [Freesurfer] vol2surf: lesion overlap across group into surfaces

Thanks again for your input! I made some output surfaces and now I have another question: Instead of creating a surface image directly from of these lesion-maps, I’d like to try to create a “derived” cortical lesion-map. In a similar fashion to the mri_aparc2aseg --labelwm (but in the other d

[Freesurfer] Errors running TRACULA (data attached)

External Email - Use Caution Dear FreeSurfer Developers, I'm attempting to run Tracula using our subjects DTI nifti files on Freesurfer version 7.1.1 (Ubuntu 18.04). I could run all steps of "trac-all" commands in a single subject using the attached configuration file (dmrirc_MU

Re: [Freesurfer] mri_extract issue

Hi Jie Try using mri_extract. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Jie Zhao Sent: Saturday, September 26, 2020 9:48 PM To: Freesurfer support list Subject: Re: [Freesurfer] mri_extract issue External Email - Use Caution Hi, Bruce Yes, the head w