Re: [Freesurfer] hippocampal segmentation freesurfer 7.1.0

Hi Angela, This is a bit odd. It looks like segmentSubjectT1_autoEstimateAlveusML.app exists in the release tar, but doesn’t get installed by the pkg installer. Thanks for pointing this out, we’ll look into it. In the meantime, you can reinstall FS from the tar at https://surfer.nmr.mgh.harvar

Re: [Freesurfer] Recon-all error in CA Normalize (FreeSurfer V 7.1)

External Email - Use Caution Hi Douglas, First of all, thank you for your help. I forgot to mention that I am already using skull-stripped data for the recon-all processing stream. Therefore, I stopped after -autorecon1 and copied the T1.mgz to brainmask.mgz and brainmask.auto.m

[Freesurfer] Thalamic Segmentation of Post Contrast MRI

External Email - Use Caution Dear FreeSurfer Experts, I have a data set (control and patients) that has 3DT1 , acquired on 3 T Philips Achieva scanner after post contract (Gadolinium). Can I use his data set to measure the thalamic nuclei segmentation or amygdala segmenta

[Freesurfer] hippocampal segmentation freesurfer 7.1.0

External Email - Use Caution Hi all, I realized that in the MacOS version of freesurfer 7.1.0 there is a file (for hippocampal segmentation) that is lacking. How can I obtain it? The file is a Matlab script: segmentSubjectT1_autoEstimateAlveusML.app That should be in /Applicat