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Hi Marina,
If you are already downloaded our lab's repo, then this function
MARS_findNV_kdTree.m (
https://github.com/ThomasYeoLab/CBIG/blob/master/external_packages/SD/SDv1.5.1-svn593/BasicTools/MARS_findNV_kdTree.m)
would help.
Alternatively, if you
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At 2020-05-02 23:42:41, "Douglas N. Greve" wrote:
Can you send your fsgd file?
On 5/2/2020 10:53 AM, jiahui wrote:
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Hello FreeSurfer Developers,
I'm attempting to compare two groups' c
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Dear All,
I ran recon-all on the 1st run using the -T2pial flag. After wm.mgz edits,
when running
recon-all autorecon2-wm -autorecon3 -T2pial volT2.mgz
it throws an error ~ 'flag volT2.mgz not recognized'. When reruning
recon-all as above, do we need t
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Hi doug, thanks for the quick response!
I‘m not quite sure if I‘m getting the second part right- could you please
elaborate a bit what you mean by
„When there is only one numerator DOF, then the sig map is signed by the sign
of the contrast (but the
Yes, that will use the CVS non-linear registration into MNI152 space.
You must have run CVS on your anatomical data first.
On 5/1/2020 2:54 PM, Kim, Gwang-Won wrote:
Dear expert,
I’ like to normalize fMRI data in MNI152 template.
Is it right?: “preproc-sess -s sess01 -fsd bold -stc up -surfa
A t-test is just F test with one DOF in the numerator -- they come out
with the exact same p-value (assuming an unsigned t-test). When there is
only one numerator DOF, then the sig map is signed by the sign of the
contrast (but the p-value is still based on an unsigned test).
On 5/2/2020 5:32
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Dear Freesurfer experts,
I have a beginner question regarding fsgd and mtx files. For example,
if I have one group and am interested in the correlation between some
test score and cortical thickness/surface area, controlling for age
and intracran
Can you send your fsgd file?
On 5/2/2020 10:53 AM, jiahui wrote:
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Hello FreeSurfer Developers, I'm attempting to compare two groups'
cortex, but for some of my subjects I get the following error when I
run mri_glmfit \ --y rh.thickness.10.mgz \ --fsgd g3v1
you could I guess, but it will likely be hard, a lot of work, and not that
repeatable
cheers
Bruce
On Sat, 2 May 2020, Zeng, Victor (BIDMC - Keshavan -
Psychiatry) wrote:
Hi all,
I was doing a little bit more researching. Could you just fix this sort of
issue by editing the aparc.auto.mg
Sorry - made a typo, I meant the aparc.presurfs rather than the aparc.auto.mgz
Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
--
From: Zeng,Victor (BIDMC - Keshavan - Psychiatry)
Sent: Saturday, May 2, 2020 2:58 AM
To: Freesurfer support l
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