Hi Safi
have you tried loading the label file into freeview? You should be able
to type the ras coordinates from the label into the freeview info window
and it will go to that point (not that there are different types of ras
displayed by freeview
cheers
Bruce
On Mon, 13 Apr 2020, Safi
Ullah
yes, if you run your T1 through FreeSurfer's recon-all you should be able
to use tracula afterwards to reconstruct tract models from your dwi data.
We use T1 because it is by far the most common anatomical sequence and
historically has had better cnr/unit-time
cheers
Bruce
On
Mon, 13 Apr 20
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Hello Respected Community,
I generated a label file using the command
mri_vol2label --c $SUBJECTS_DIR/bert/mri/brainstemSsLabels.v10.mgz --id 173
--l midbrain.label
the content of the label file is probably in RAS format. My question is how
to locate a
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Thank you very much Sir for your effort and time to answer my questions.
I am afraid I have not got the answer for the following:
- If I have Freesurfer installed in my PC; I also have T1 and diffusion
weighted image sequence of a subject. Can
Hi Koustav
the current version of FS requires a T1-weighted input but could also use
a T2 to improve accuracy and automaticity. Future versions will relax
this constraint.
As for 2D/3D, you have to distinguish the acquisition type (which almost
always should be a 3D sequence like an MP-RAGE
