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Dear Douglas,
Thank you very much for the help. We could solve the problem with that
subject but now we have a similar problem with another subject. In the
previous case, we have only one problematic voxel in the skull, but now the
label 75 (it shouldn
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You are absolutely right—once each binary is approved once then it is saved in
that state much like previous versions of macOS. I’m sure the next few updates
for Catalina will tackle this issue to allow nested permissions extensions.
Cheers,
Aditya
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Shame on me; this list is for Freesurfer indeed. Sorry.
However, thanks for your reply Eugenio! I am looking forward to getting
the more granular answer (;)) from Jean Augustinack.
--
Frederic Briend, PhD
__
Hi Ezequiel
-noscale 1 works in most cases, but here the analyze file itself specifies
a scalling that is done as part of the reading process. If you want to
disable it try (in tcsh):
setenv FS_ANALYZE_NO_RESCALE 1
then run mri_convert as before. You should see an addition printout in the
o
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Dear All,
I have a similar problem to the one posted here ( Re: [Freesurfer] mri_convert
scaling ). In my case I'm trying to convert from ANALYZE (.img, .hdr and .mat)
to NIFTI and I need to keep the scale as in the original file. I've tried the
-ns
Hi James
I think the -lh/-rh flags are for processing single (ex vivo) hemis, not
for only processing one hemi in a whole-brain image. If you want to erase
the hemi with the tumor it will probably work
cheers
Bruce
On Wed, 9 Oct 2019, 王子谦
wrote:
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When you run mri_info on that file, what do you see?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Juan Rivas
Sent: Wednesday, October 9, 2019 8:36:48 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Freesurfer Digest, Vol 188, Issue
Dear Frederic,
I’ll defer to Jean Augustinack (CCed) for a more granular answer (pun
intended), but here are my initial thoughts.
1. You can find the definition in Table 2 of the paper, which is open
access: https://www.sciencedirect.com/science/article/pii/S1053811915003420
2. Yes.
3.
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Hi, thank you for your answer. This file does exist, it contains 59.3 MB.
JC.
Message: 10
Date: Tue, 8 Oct 2019 22:23:11 +
From: "Yendiki, Anastasia"
Subject: Re: [Freesurfer] Tracula
To: "freesurfer@nmr.mgh.harvard.edu"
Message-ID:
<
bl
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Dear Matt,
Memtest 86+ and similar tools can test the DRAM module only for hard errors
(hardware defects). Are you suggesting that the soft errors (the common
spontaneous flipping of a bit state) that happen in all memories do not have a
considerabl
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Dear developers,
right now I'm trying to measure the cortical thickness of the right
hemisphere in the left side tumor patients. Here I met some problem. Since
the complex intensities in the tumor, it makes the 'recon-all -all' command
to be very time
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It worked as intended. Thank you very much.
On Tue, Oct 8, 2019 at 6:43 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> In that case, run mris_preproc in the same way but don't include the
> paired-diff. Concatenate the two groups togeth
Hi David,
I am not very optimistic:
5mm is too thick for FreeSurfer (recommendation is 1 up to 1.5). You
will certainly get something, but it can be very unreliable and
completely wrong. Especially longitudinally these thick slices will
induce large variance due to different head positioning (an
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