Re: [Freesurfer] Discrepancy between thresholded surface and cluster labels

External Email - Use Caution Hi Bronwyn, thanks for the update and additional info. I have to say that I have no very good clue at the moment. Could you maybe upload an examplary file to the Freesurfer FileDrop at https://gate.nmr.mgh.harvard.edu/filedrop2/ so that we can take

Re: [Freesurfer] username and password

External Email - Use Caution Hello Takashi, Did you create a login to the list on this page, http://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer - and then receive the email notification, and then did you do the confirmation step? - R. On Oct 1, 2019, at 11:03, Yamada, T

[Freesurfer] selxavg3-sess

External Email - Use Caution Hi all, I am running the functional analyses (selxavg3_sess) and stuck at the following error, which I have no idea what to do (apparently the analyses have been OK up until run 010 and the error happened in run 012). I received the same errors in m

[Freesurfer] BIDS Governance and Steering Group voting has opened!

External Email - Use Caution The time has come to vote on our BIDS Governance document (https://docs.google.com/document/d/1R-J2lL9V_wIkYhye4zH-feyl4P4J8NyO40rIYyY141o/edit?usp=sharing) and for the inaugural Steering Group (https://docs.google.com/document/d/1yb6j3a90serWbtab7uk

[Freesurfer] Research Assistant Position at Brown University

External Email - Use Caution Dear colleagues: We are looking for a Research Assistant who will join a group of researchers studying Aging and Alzheimer's disease at Brown University. 50% of time of the position will be devoted to behavioral and fMRI experiment preparation, data co

[Freesurfer] username and password

External Email - Use Caution Hi, I'm subscribers of freesurfer. However, I am about to reading the mail exchange about the Q&A of freesurfer, I was asked to input the username and password, then I cannot read them. How should I proceed for that? Best, Takashi Yamada -

Re: [Freesurfer] Hippocampal and Amygdala Segmentation Error - Incorrect Path and Missing Files

Dear CC, Did you source FreeSurfer at /g5/dcn/freesurfer_testing/HippoSegment_Test/freesurfer/ ? setenv FREESURFER_HOME /g5/dcn/freesurfer_testing/HippoSegment_Test/freesurfer/ source $FREESURFER_HOME/SetUpFreeSurfer.csh Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (U

[Freesurfer] Hippocampal and Amygdala Segmentation Error - Incorrect Path and Missing Files

External Email - Use Caution To whom it may concern, I am attempting to run the hippocampal and amygdala segmentation (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala) on the development version of FreeSurfer. However, I am running into a couple